Sam Morabito
Sam Morabito
Hey I just ran into a very similar problem. I used the `as.cell_data_set` function from the `SeuratWrappers` package to convert my Seurat object to a cell data set for pseudotime...
HI, Thanks for pointing this out, I am aware of this issue and am trying to figure out how to resolve it. To make these network plots I am currently...
Hi, yes this is possible but I don't currently have any timeline for adding this into hdWGCNA. The TOM representation of the network can be extracted using `GetTOM` if you...
Hi, Thank you for posting the issue, I am looking into it now.
Hi again, At this time I have not been able to reproduce your error on my side so it's hard for me to figure out what's going on. Based on...
It seems like you may be trying this on a cluster that is too spatially constrained. The metaspots algorithm works by aggregating the transcriptome information for neighboring spots. There's a...
Hi Chang, Can you please provide all relevant hdWGCNA code that you ran? Also wondering if you are able to reproduce this error in the tutorial dataset?
Can you clarify this statement: > Hmm the tutorial works works, I however skipped the setDataExpr step and now get an error during ModuleConnectivity: Is the error showing up on...
Definitely something that will be done in a future update, but I don't have a plan to do it immediately.
Hi, I think that you should be able to use the `npcs` argument already, I tried this: ``` seurat_obj