pbmc <- ModuleEigengenes( pbmc, group.by.vars = "orig.ident" ) pbmc@misc$PBMC$MEs %>% head NULL

[Baozi9]

When i run this code to compute all MEs in the full single-cell dataset , however, the result of MEs is full of the character"NAN"，like the picuture just show. I don"t kown waht happened ,can someone give some sugggestion? Thanks a lot!! #####code pbmc <- ScaleData(pbmc, features = VariableFeatures(pbmc))

compute all MEs in the full single-cell dataset

pbmc <- ModuleEigengenes( pbmc, group.by.vars = "orig.ident" )

pbmc@misc$PBMC$MEs %>% head NULL

[smorabit]

Hi,

Are you able to reproduce this behavior on the tutorial dataset? I have not encountered NaN values in the modules table before.

[smorabit]

Closing this issue due to inactivity.