scvi-tools
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Deep probabilistic analysis of single-cell and spatial omics data
It would be very useful to have some quantification of model uncertainty for the scANVI cell type classification output. In the simplest form this could be the softmax output from...
Hello dear developers, I am going to work with your tools in my bachelors thesis. That being said, I had trouble using it on windows. As suggested, I am going...
I've written this a few times in the past, but I can't say this often enough: Thank you for sharing your excellent analysis software with the community! I'm writing to...
Would be great to have train validations split balanced by cell labels or batch - which is useful when there are rare populations. This can be addressed by adding a...
Hi, I was investigating a case where the mean fold change was very small, but the `proba_de` was relatively large. The current decision function to consider a posterior sample to...
