scvi-tools
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Deep probabilistic analysis of single-cell and spatial omics data
closes #2541. draft implementation of adding jaxtyping tensor shape annotation to vae
**Is your feature request related to a problem? Please describe.** Not a problem - mainly clarification questions. I am wondering how to modify scANVI to handle continuous prediction tasks. Currently,...
This PR implements methylation variational inference (methylVI) for modeling methylation data from single-cell bisulfite sequencing (scBS-seq) experiments, described originally in [Weinberger and Lee (2024).](https://openreview.net/forum?id=Mg2DM0F3AY). In short, methylVI assumes that counts...
When training the DestVI model I get Expected value argument (Parameter of shape (7150,)) to be within the support (Real()) of the distribution Normal(loc: torch.Size([7150]), scale: torch.Size([7150])), but found invalid...
Whenever I try to run the model or (after having run the model somewhere else) I try to access it with `model = scvi.model.PEAKVI.load(model_dir, adata=adata)` I get the bug shown...
Hello, I'm trying to use CellAssign as implemented within scvi-tools to map a query dataset onto my annotated reference. However, I am running into an error when trying to train...
When trying to use a custom classifier in the adversarial training plan, i get an `scvi 'AdversarialTrainingPlan' object has no attribute 'n_output_classifier'` error, I think because it's not set here...
