Ryan Ly

Syntax highlighting in code blocks in slides

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Suggestion: Would it be possible to add syntax highlighting in code blocks in the slides? Syntax highlighting exists for exercises, but for slides with a lot of code, it would...

Alter fails on tables with filepath@ and no explicit index when index has not changed

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## Bug Report ### Description If a table has an external store, e.g., the "nwb_file_abs_path" field in the example below, then an INDEX is created on the table for this...

Fix error when altering Part table that uses "master" keyword

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Fix #936. The core of the issue appears to be that the "master" keyword in the Part table definition does not match the name of a table in `context`. So...

alter() prompts user when table definition has not changed

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## Bug Report ### Description When the table definition is written in a particular way, `MyTable.alter()` asks the user whether to alter the table, regardless of whether the table definition...

## Motivation Fix #1497. ## Checklist - [ ] Did you update CHANGELOG.md with your changes? - [x] Have you checked our [Contributing](https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/docs/CONTRIBUTING.rst) document? - [x] Have you ensured the...

Cannot read file after nwbfile.copy() with Units

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## Description When reading a file generated from a shallow copy `copy()` on an `NWBFile` with a `Units` table, I get the error: ``` File "c:\users\ryan\documents\nwb\hdmf\src\hdmf\build\objectmapper.py", line 1007, in construct...

[Feature]: Raise error for `SpatialSeries` created by user with >3 columns

1

### What would you like to see added to PyNWB? See #1479. It is currently difficult to raise this error without making older files that contain a `SpatialSeries` with >3...

### What would you like to see added to PyNWB? NWB 2.5.0 which will be released soon made changes to `IndexSeries` and `Images`: https://github.com/NeurodataWithoutBorders/nwb-schema/pull/459 ### Is your feature request related...

## Motivation Fix #1291. The extensions documentation could use some more work, but at least this fixes the code examples and adds important information. ## Checklist - [x] Have you...

### What would you like changed or added to the documentation and why? The documentation https://pynwb.readthedocs.io/en/stable/pynwb.file.html#pynwb.file.NWBFile.add_electrode_column : ``` See add_column for more details ``` has a broken link for `add_column`....