Ryan Ly

Results 180 issues of Ryan Ly

### What would you like to see added to PyNWB? 1. Include a flag in the NWB catalog entry for an extension that says installing the python package is recommended...

category: enhancement
topic: extension
priority: low

### What would you like to see added to PyNWB? Breaking changes (release in PyNWB 3.0) - [ ] https://github.com/NeurodataWithoutBorders/pynwb/issues/1807 - [ ] https://github.com/hdmf-dev/hdmf/issues/608 and related https://github.com/hdmf-dev/hdmf/issues/525 - [ ]...

category: enhancement
priority: high
topic: HDMF
topic: validator

### What would you like to see added to PyNWB? From https://github.com/NeurodataWithoutBorders/pynwb/issues/1777 and follow-up to https://github.com/NeurodataWithoutBorders/pynwb/pull/1511 The behavior of the `pynwb.validate` function with `paths` kwarg, `pynwb.validate` function with `io` kwarg,...

category: enhancement
priority: high
topic: validator

### What would you like to see added to PyNWB? Follow-up to https://github.com/NeurodataWithoutBorders/pynwb/pull/1794 It would be ideal if in the CI of this repo or in a separate repo like...

category: enhancement
topic: testing
priority: low

## Motivation Partner PR to https://github.com/hdmf-dev/hdmf/pull/868 TODO: - [ ] Add tests - [ ] Move validation to separate function that is called on build or into the setter (moving...

### What would you like changed or added to the documentation and why? Related to https://github.com/hdmf-dev/hdmf/issues/972 If a group spec contains group or dataset neurodata types and specifies a particular...

category: enhancement
topic: docs
topic: extension
priority: low

### What would you like to see added to PyNWB? You can render notebooks in Sphinx docs and keep the sphinx gallery thumbnail feature: https://docs.readthedocs.io/en/stable/guides/jupyter.html This makes it possible for...

category: enhancement
topic: docs
help wanted: good first issue
priority: low

## Motivation The docstring for `PlaneSegmentation.add_roi(...)` should describe why/when to use image_mask vs pixel_mask or voxel_mask. Based on feedback from the Allen Institute. ## Checklist - [x] Have you checked...

### What would you like to see added to PyNWB? Add a convenience function to get the version of a cached namespace from a file, without having to parse and...

category: proposal
priority: low

### What happened? See https://github.com/NeurodataWithoutBorders/pynwb/actions/runs/5675668685/job/15381245506?pr=1741 ``` 2023-07-27 02:03:42,738 - INFO - Executing /home/runner/work/pynwb/pynwb/docs/gallery/general/read_basics.py ====================================================================== 2023-07-27 02:03:43,203 - INFO - Failed to extract font properties from /usr/share/fonts/truetype/noto/NotoColorEmoji.ttf: In FT2Font: Could not...

category: bug
topic: testing
priority: low