Ryan Ly
Ryan Ly
The `ImageSeries` neurodata_type is a subtype of `TimeSeries`. `TimeSeries` requires the dataset `data`; however, `ImageSeries` makes `data` optional because `external_file` may be provided in place of `data`. This breaks the...
## Summary of changes - Fix #336, will replace #337 Need to get PyNWB and MatNWB to work with this first. ## Checklist For all schema changes: - [ ]...
cc @dysprague @CodyCBakerPhD @bendichter Some species have different requirements than others. For example, C Elegans sex is either XO or XX. @dysprague created the ndx-multichannel-volume extension that includes a [`CElegansSubject`...
This is the smallest of quality-of-life issues. It would be nice if `stimulus/presentation` and `stimulus/templates` were made optional so that if empty, they are not included in the NWB file....
The docs for `band_mean` and `band_sd` in `DecompositionSeries` say that these fields are specific to Gaussian filters. Not all filters used in neurophysiology are Gaussian though, e.g., an LFP decomposition...
A few of us discussed at our meeting this week how best to associate units of measurement with simple attribute metadata, often about devices or protocols (e.g., `emission_lambda` (in nm),...
From https://blog.readthedocs.com/migrate-configuration-v2/ > We are announcing a new requirement for all builds to use our configuration file version 2. This announcement deprecates builds without a configuration file, as well as...
As per discussion with NWB + CatalystNeuro team. Add `num_frames_per_external_file` to `ImageSeries`. There is currently no way to figure this out without opening the image files. This would help support...
NWB does not support 4D colored, static volumes, but volumetric imaging is becoming more popular in neurophysiology experiments. Context: > Currently, the format of our data is GCAMP time series...