cobratoolbox
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opencobra
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
*Please include a short description of problem here* **I hereby confirm that I have:** - [ ] Tried to solve the issue on my own - [ ] Retried to...
I was trying to optimize the GPR parsing code using existing implementations for boolean formula/sat solving processors and found one oddity in some formulas: There are sometimes genes which have...
*Please include a short description of problem here* Currently OpenCobra is not opened to .NET and java programmers Through the **[MATLAB Compiler SDK](https://ch.mathworks.com/help/compiler_sdk/index.html)**, this toolbox could potentially be made available...
When initializing dynamic FBA it assumes, that exchange reactions which can take up metabolites and are assigned a 0 concentration will be non limiting. Essentially, those initial concentrations are set...
Currently, `optimizeCbModel` returns a solution with plenty of fields which are redundant e.g. v, x, full for the variable value f, obj for the objective value Which are partially undocumented...
`createMultipleSpeciesModel` should, by default, if given only a single model for input, output a model that performs equivalently under FBA as the original model. For instance, given the model iAF1260,...
I tried to write a test for checkConsistency and findStoichConsistentSubset using the following network: ``` % A -----> B ---> C --> E % \ ^ % \ / %...
@fromseto and I have tried to run the latest version (as of July 12, 2017) of `tutorial_relaxedFBA.mlx` from the `develop` branch. We found that: 1. The .mlx and .m files...
Update the documentation of the function **I hereby confirm that I have:** - [X] Tested my code on my own machine - [X] Followed the guidelines in the [Contributing Guide](https://opencobra.github.io/cobratoolbox/docs/contributing.html)...
findRxnsFromMets.m The function aways give me either first rxn from the `model.rxn` or a list of rxn does not match input. After I looking into the code, it seems that...
