First Neuroimaging module : denoising/nlmeans
PR checklist
- [ ] This comment contains a description of changes (with reason).
- [x] If you've fixed a bug or added code that should be tested, add tests!
- [ ] If you've added a new tool - have you followed the module conventions in the contribution docs
- [x] If necessary, include test data in your PR.
- [x] Remove all TODO statements.
- [x] Emit the
versions.ymlfile. - [x] Follow the naming conventions.
- [ ] Follow the parameters requirements.
- [ ] Follow the input/output options guidelines.
- [x] Add a resource
label - [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- For modules:
- [x]
nf-core modules test <MODULE> --profile docker - [x]
nf-core modules test <MODULE> --profile singularity - [ ]
nf-core modules test <MODULE> --profile conda
- [x]
- For subworkflows:
- [ ]
nf-core subworkflows test <SUBWORKFLOW> --profile docker - [x]
nf-core subworkflows test <SUBWORKFLOW> --profile singularity - [ ]
nf-core subworkflows test <SUBWORKFLOW> --profile conda
- [ ]
- For modules:
As I mentioned in the tools issue, I changed my opinion on it after some pushback.
Some ideas are:
modules/nf-core/scil/denoisingnlmeansmodules/nf-core/scil/denoising_nlmeansmodules/nf-core/scil/denoising/nlmeans
Main focus being not creating a lot of infrastructure work surrounding this adoption. 1 will definitely work, 2 and 3 may not with either the new containers workflows or linting but if the naming and organization is more appealing you're welcome to try!
I would go for modules/nf-core/scil/denoisingnlmeans
Do you still plan to finish this? @AlexVCaron
This PR has been tagged as awaiting-changes or awaiting-feedback by an @nf-core/modules contributor. Remove stale label or add a comment if it is still useful.
This PR has been tagged as awaiting-changes or awaiting-feedback by an @nf-core/modules contributor. Remove stale label or add a comment if it is still useful.
Is this being worked on or shall we close for now?
This PR has been tagged as awaiting-changes or awaiting-feedback by an @nf-core/modules contributor. Remove stale label or add a comment if it is still useful.