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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
## PR checklist Init basic MiXCR module for TCR/BCR processing. While there is a lot more functionality in MiXCR that could be added for larger workflows (e.g. `airrflow`), for now...
## PR checklist Closes #5070 - [x] If you've added a new tool - have you followed the module conventions in the [contribution docs](https://github.com/nf-core/modules/tree/master/.github/CONTRIBUTING.md) - [x] If necessary, include test...
Adds the [xengsort tool](https://gitlab.com/genomeinformatics/xengsort), a tool for fast lightweight accurate xenograft sorting. This is a part 2 of two steps for xengsort, classifier. First part is in review: https://github.com/nf-core/modules/pull/5370 ##...
## PR checklist Closes #5074 - [x] This comment contains a description of changes (with reason). - [x] If you've added a new tool - have you followed the module...
https://github.com/nf-core/differentialabundance/issues/459 Draft POC / work in progress ## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...
- **Start working on the RTN TNA module** - **Fix indentation for ECLint check** - **Update RTN package version & use Seqera Containers** - **Updates environment.yml and meta.yml** - **Add...
Add the RTN TNA module ## PR checklist Closes #8451 - [X] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or...