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Gemma kinshipmatrix

Open chriswyatt1 opened this issue 7 months ago • 2 comments

PR checklist

Closes #8463 https://github.com/nf-core/modules/issues/8463

This module does the kinship matrix part of gemma. I cannot get docker to work even though there is a biocontainer, and have not tested with singularity.

  • [x] This comment contains a description of changes (with reason).
  • [x] If necessary, include test data in your PR.
  • [x] Remove all TODO statements.
  • [x] Emit the versions.yml file.
  • [x] Follow the naming conventions.
  • [x] Follow the parameters requirements.
  • [x] Follow the input/output options guidelines.
  • [x] Add a resource label
  • [x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [x] nf-core modules test <MODULE> --profile docker
      • [x] nf-core modules test <MODULE> --profile singularity
      • [x] nf-core modules test <MODULE> --profile conda

chriswyatt1 avatar May 14 '25 19:05 chriswyatt1

It now works with docker and singularity, so think good to go except,, the input test data is on another github repo,,,, is this ok??

chriswyatt1 avatar May 15 '25 13:05 chriswyatt1

Not sure how to fix the remaining errors.

chriswyatt1 avatar May 20 '25 13:05 chriswyatt1