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Add CI to build mulled containers with Wave

30

Closes #4077

edmundmiller

### Is your feature request related to a problem? Please describe I'm using `bbmap.sh` to filter out host reads (paired-end or not) from metagenomics data. What I'd actually want is...

njohner

Shigapass

5

## PR checklist - [X] This comment contains a description of changes (with reason). - [X] If you've fixed a bug or added code that should be tested, add tests!...

maxlcummins

## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

vtorda

bumped MultiQC version for dumpsoftwareversions

9

## PR checklist This just updates `dumpsoftwareversions` to the latest version of theMultiQC container. - [x] This comment contains a description of changes (with reason). - [ ] Emit the...

harper357

This PR fixes issues where the stubs doesn't behave like the program would. I.e. running bcftools with `--output-type u/b --write-index=tbi`, it still outputs a csi index, but were outputting a...

fellen31

SPPearce

Script to fetch unique conda environments

6

Script to go over all conda `environment.yml` files and pull out a unique, normalised set (consistent whitespace, no comments). Will be useful when requesting initial set of Seqera Containers for...

ewels

### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...

jfy133

Added nf-test for hmtnote/annotate

2

Added nf-test for hmtnote/annotate with #6226

GallVp