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fixes sample fastq output bug in cellranger mkfastq

7

## PR checklist Closes [#6189](https://github.com/nf-core/modules/issues/6189) - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

julicudini

> We should probably try to do this systematically for all modules 🤔 In this case it was already annotated in the meta yaml: > > https://github.com/nf-core/modules/blob/a25abe62ccf3fe3767d2449d8322a35ab62844e0/modules/nf-core/sratools/prefetch/meta.yml#L44 _Originally posted by...

mirpedrol

add dragen module - v2

7

## PR checklist Closes #4026 - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

marrip

### Have you checked the docs? - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug Changes to files in `template` folders don't trigger our...

pinin4fjords

### Have you checked the docs? - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug To use the vcfeval engine in hap.py executable of...

melferink

Added new module: msisensorpro/msitumoronly

6

This module enables tumor-only analysis for msisenspro (msisensor-pro pro)

bounlu

Improve module specific resource requests

2

Meta issue from #6628 for more discussion and dropping some resources. We might need to do some benchmarking of the biggest bottleneck modules.

edmundmiller

Snapshot content of version files instead of a hash

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Currently we're snapshoting the versions.yml and getting a hash: https://github.com/nf-core/modules/blob/17b8bedf740a8403b548e49853246f1d9a24caa3/modules/nf-core/ale/tests/main.nf.test.snap#L26-L28 ```diff "versions": [ - "versions.yml:md5,949da9c6297b613b50e24c421576f3f1" + "content": ["{ALE={ale=20180904}}"], ]

edmundmiller

## PR checklist Closes #XXX - [ x ] This comment contains a description of changes (with reason). - [ x ] If you've fixed a bug or added code...

bruno-ariano

## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code that should...

matthdsm