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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
## PR checklist Closes #XXX - [x] Fixed output channel vcf_lifted. Before adding the "." it would output both lifted and unlifted in the vcf_lifted channel. - [ ] If...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
This PR adds the ampcombi module. It is now working on taking two kinds of inputs. The respective flags are called depending on whether the input is a directory or...
Fixes #1133 ## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code...
### Is your feature request related to a problem? Please describe https://nf-co.re/docs/contributing/tutorials/dsl2_modules_tutorial Current document shows old practises : e.g. ``` // Import generic module functions include { initOptions; saveFiles; getSoftwareName...
## PR checklist New module for bedtools/coverage Closes #XXX - [ x] This comment contains a description of changes (with reason). - [ x] If you've fixed a bug or...
## PR checklist Closes #XXX - [ x ] This comment contains a description of changes (with reason). - [ x ] If you've fixed a bug or added code...
This PR adds a wrapper for DESeq2. Notes: - Implemented as a template, initially due to need to include a wrapper script and current lack of module `bin` directory (see...
## Description User request to add module for PretextMap. Added module alongside with test config. ## PR checklist Closes #1947 - [x] This comment contains a description of changes (with...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
