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Bbmap filterbyname

Open tokarevvasily opened this issue 1 year ago • 0 comments

PR checklist

Closes #XXX

  • [ x ] This comment contains a description of changes (with reason).
  • [ x ] If you've fixed a bug or added code that should be tested, add tests!
  • [ x ] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ x ] If necessary, include test data in your PR.
  • [ x ] Remove all TODO statements.
  • [ x ] Emit the versions.yml file.
  • [ x ] Follow the naming conventions.
  • [ x ] Follow the parameters requirements.
  • [ x ] Follow the input/output options guidelines.
  • [ x ] Add a resource label
  • [ x ] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • [ x ] PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ x ] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ x ] PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

tokarevvasily avatar Oct 10 '22 16:10 tokarevvasily