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PR checklist
Closes #XXX
- [ x ] This comment contains a description of changes (with reason).
- [ x ] If you've fixed a bug or added code that should be tested, add tests!
- [ x ] If you've added a new tool - have you followed the module conventions in the contribution docs
- [ x ] If necessary, include test data in your PR.
- [ x ] Remove all TODO statements.
- [ x ] Emit the
versions.yml
file. - [ x ] Follow the naming conventions.
- [ x ] Follow the parameters requirements.
- [ x ] Follow the input/output options guidelines.
- [ x ] Add a resource
label
- [ x ] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- [ x ]
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ x ]
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ x ]
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ x ]