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nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
From Nextflow version `22.4.0`, the DSL2 declaration is not needed anymore at the top of the script (i.e. `nextflow.enable.dsl = 2`). See [here](https://www.nextflow.io/blog/2022/evolution-of-nextflow-runtime.html). Hence, it can be removed from all...
## Is your feature request related to a problem? Please describe ## Describe the solution you'd like ## Describe alternatives you've considered ## Additional context
This is an update of all `last/*` modules to a more recent version of LAST. Some `test.yml` files got a lot of entries removed; the reason is that they were...
I think it would be good to have a module for [samtools](https://bioconda.github.io/recipes/samtools/README.html)/calmd - [ ] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command - [ ]...
I think it would be good to have a module for [endorspy](https://bioconda.github.io/recipes/endorspy/README.html) - [x] This module does not exist yet with the [`nf-core modules list`](https://github.com/nf-core/tools#list-modules) command - [x] There is...
## Description of the bug When using these modules with aws-igenomes the mem fails, because the below lines pick up multiple indexes ``` INDEX=`find -L ./ -name "*.amb" | sed...
## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
Bumping the samtools version causes dependency conflicts: https://github.com/BioContainers/multi-package-containers/runs/5881903366?check_suite_focus=true
Adding MetaMaps, a tool for taxonomic analysis of long-read (PacBio/Oxford Nanopore) metagenomic datasets. Metamaps database in this PR: https://github.com/nf-core/test-datasets/pull/474/ (merged) Test data to use as input in this PR: https://github.com/nf-core/test-datasets/pull/492...
Vartrix (https://github.com/10XGenomics/vartrix) is a tool to quantify single cell SNP data. As it is not available here I think it would be a good idea to get it. This should...
