Add AMPcombi module

[Darcy220606]

This PR adds the ampcombi module. It is now working on taking two kinds of inputs. The respective flags are called depending on whether the input is a directory or file. (1) The results directory (e.g.amp_results) with a specific tree (2) A file list (equivalent to the individual filepaths of the files generated by the AMP tools) and the sample ID provided through the meta

PR checklist

Closes #XXX

• [x] This comment contains a description of changes (with reason).
• [x] If you've fixed a bug or added code that should be tested, add tests!
• [x] If you've added a new tool - have you followed the module conventions in the contribution docs
• [x] If necessary, include test data in your PR.
• [x] Remove all TODO statements.
• [x] Emit the versions.yml file.
• [x] Follow the naming conventions.
• [x] Follow the parameters requirements.
• [x] Follow the input/output options guidelines.
• [ ] Add a resource label
• [x] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • [x] PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
  • [ ] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
  • [x] PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

[louperelo]

@nf-core-bot fix linting

[Midnighter]

Congrats 🎉