modules
modules copied to clipboard
nf-core
Repository to host tool-specific module files for the Nextflow DSL2 community!
### Is your feature request related to a problem? Please describe The subworkflow shouldn't take a fasta file and create an aligner index - out of scope xref #2302 xref...
## PR checklist Closes #2095 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
### Have you checked the docs? - [X] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting) - [X] [nf-core modules documentation](https://nf-co.re/docs/contributing/modules) ### Description of the bug Not really a bug per se, but here goes....
This PR updates the sourmash sketch module. In `main.nf`: + upgrades to the latest version of sourmash (4.5.0) + updates the params string to the standard set of parameters typically...
## PR checklist Closes https://github.com/nf-core/modules/issues/2214 - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
### Is there an existing module for this? - [X] I have searched for the existing module ### Is there an open PR for this? - [X] I have searched...
Contributes to #2154 cardinality was wrong for the `MALT_BUILD` test (needs 5 inputs), have changed this to what I feel is the default (see below), and run nf-core modules test,...
Fixes #2278 ## PR checklist Closes #XXX - [ ] This comment contains a description of changes (with reason). - [ ] If you've fixed a bug or added code...
## PR checklist Closes #XXX - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or added code that should be tested,...
## PR checklist - [x] Adding the module mageck/count - [x] If you've fixed a bug or added code that should be tested, add tests! - [x] If you've added...
