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New module: bedtools coverage
PR checklist
New module for bedtools/coverage
Closes #XXX
- [ x] This comment contains a description of changes (with reason).
- [ x] If you've fixed a bug or added code that should be tested, add tests!
- [ x] If you've added a new tool - have you followed the module conventions in the contribution docs
- [ ] If necessary, include test data in your PR.
- [ x] Remove all TODO statements.
- [x ] Emit the
versions.ymlfile. - [ x] Follow the naming conventions.
- [ x] Follow the parameters requirements.
- [ x] Follow the input/output options guidelines.
- [ x] Add a resource
label - [ x] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- [ ]
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware - [ x]
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware - [ ]
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ ]