methylseq

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Create metro map

1

### Description of feature It would be very nice if methylseq had a metro map, so that is easier to get an overview of the pipeline.

matrulda

Support for NuGen Ovation RRBS libraries

3

This pull request introduces an initial implementation for processing NuGen Ovation RRBS libraries, drawing guidance from the commands outlined in the [NuMetRRBS](https://github.com/nugentechnologies/NuMetRRBS) repository. Currently, the focus is on integrating fundamental...

jma1991

Add `rastair`

1

Hello, Please add [rastair](https://bitbucket.org/bsblabludwig/rastair/src/master/) to the pipeline as [an alternative tool](https://www.nature.com/articles/s41587-019-0041-2) to analyse **methylseq** data without bisulfite conversion (TAPS = TET Assisted Pyridine borane Sequencing).

bounlu

Support for NuGEN Ovation RRBS

2

### Description of feature Hello, I've adapted the workflow to process data from the NuGEN Ovation RRBS Methyl-Seq system. See [branch](https://github.com/zifornd/methylseq/tree/ovation) and processing [guidelines](https://github.com/nugentechnologies/NuMetRRBS). I'm considering contributing this to the...

jma1991

Fix CI rate-limit

2

- post-release dev bump version and snapshots - fix for bug #354 - dev branch - Update modules.config - Update CHANGELOG.md - chore: Update CHANGELOG - ci: Add scatter CI...

edmundmiller

Add Biscuit

6

Hello all, I've put together a draft PR incorporating the [Biscuit](https://huishenlab.github.io/biscuit/) suite of tools. This is still a work in progress, but I wanted to open the PR and get...

njspix

Hs metrics

5

The module: collecthsmetrics is now available from modules/nf-core

RogerHw

Pipeline unable to recognise samples processed across multiple lanes

2

### Description of the bug I've identified a potential issue in the recent pipeline release (v2.5.0). It seems the groupTuple command is executed twice during the input channel creation and...

jma1991

### Description of feature Qualimap has notoriously high memory usage, which means when analysing ultra-high depth samples it can run out of memory and bring the entire pipeline down. We...

adamrtalbot

https://github.com/nf-core/methylseq/pull/350#discussion_r1434869399 ```[tasklist] ### Tasks - [ ] Cache Nextflow - [ ] Clean up Job names - [ ] Better reporting ```

edmundmiller