nmdc-schema

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remove `was_informed_by` from `WorkflowExecution`

4

Remove `was_informed_by` `WorkflowChain` will be the new grouping class to group all of the workflows together. After `WorkflowChain` class is created and migration has ocurred.

brynnz22

Identify all broken hyperlinks in NMDC Schema documentation

32

This task was suggested by @turbomam, who said all the hyperlinks are defined in Markdown files in the `docs` directory. I plan to use https://github.com/lycheeverse/lychee to check the hyperlinks. Related:...

eecavanna

Update the `extract-study` tool: - rename to extract-studies and update docs - support multiple study ID's as input - Pull data for multiple studies, output to a single `nmdc_schema.Database` compliant...

mbthornton-lbl

- #1802 etc.

turbomam

turbomam

Here's a link to the `nmdc-schema` package on PyPI: https://pypi.org/project/nmdc-schema/

eecavanna

NMDC Capture of Alternate and Related Identifiers

2

NMDC wants to provide and capture external / alternate and related identifiers to provide to users. Alternate identifiers = an identifier for the EXACT same thing Related identifiers = an...

mslarae13

Do we have a way to update the version value in the schema based on a GH tag or vice versa?

1

turbomam

vPrev->vCurrent nmdc:Database migration script on each release if needed

3

given that a principal use case of our schema-as-software (the importable `nmdc_schema` package) is to support the maintenance of schema-conformant databases (e.g. `nmdc:Database` JSON), it seems reasonable for each schema-as-software...

dwinston

the nmdc-schema may contain some `Biosample` slots that belong exclusively to the submission-schema

5

For example, `rna_volume` is defined in nmdc-schema and associated with `Biosample`. We even have some tests for it. If it is important to capture that information in the SubmissionPortal, so...

turbomam