nmdc-schema

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turbomam

Good question. Suggested by @mslarae13

turbomam

Take the queries developed for #1865 and refactor them into a script for automatic execution and report generation

mbthornton-lbl

remove `ecosystem_diagram.md` from berkeley-schema-fy24

2

there are better diagrams from other people now

turbomam

Assess the usefulness of nmdc-schema (not MIxS) subsets

3

## In the berkeley-schema-fy24 > ``` > {'data_object_subset': ['DataObject'], > 'data_portal_subset': ['associated_dois', > 'doi_value', > 'doi_provider', > 'doi_category'], > 'environment': [], > 'investigation': [], > 'nucleic acid sequence source': [],...

turbomam

turbomam

After re-iding is complete we can remove the extra logic to support from nmdc_schema_accepting_legacy_ids.py Depends on: https://github.com/microbiomedata/issues/issues/532 Target release 2024.4

aclum

Create example data for MaterialProcessing Subclasses

10

A running issue until all MaterialProcessing Subclasses have an example data set committed for them: - [x] SubsamplingProcess - [x] MixingProcess - [x] FiltrationProcess - [x] PhaseSeparationProcess - [ ]...

anastasiyaprymolenna

DRAFT: replace problematic "Solution" and "compound" modeling with "Fluid" and "name"

1

A Fluid class would be supportive of GC and LC. The choice of a `compound`/`name`slot decision will depend on how we link form external reference knowledge about substances to processes...

turbomam

NMDC guidelines for usage of available ontologies

6

What are the requirements for an ontology to be an approved source of reference for the NMDC? Does there have to be a certain amount of community acceptance? Or certain...

anastasiyaprymolenna