immunarch

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dbAnnotate for similar CDR3 (e.g. Levenshtein distance)

3

## 🚀 Feature Hi guys, I'm new to github, so not sure how/where to post things. I believe a function that uses Levenshtein distance or others would be really useful...

marcopretti

Error in tSNE plot generation and automated pipeline for multiple samples , urgent help needed !!

3

Hello we have an app wrapped for immune arch on DNAnexus and consistently are getting this error for many sample types and it looks like the tSNE plot doesn't like...

ankitadas460

Error processing batch files

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Hi, I was trying to run Immunarch on DNANexus and was unable to process more than 3 files at a time. The tool was unable to create TSNE plots and...

aishwaryachander

vis(pubRepStatistics()) issue: max 5 groups and incorrect data

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## 🐛 Bug I am unable to visualize intersections between more than 5 groups/samples using vis() on pubRepStatistics(). I have 13 groups but vis() only displays 5. ## To Reproduce...

andrewni4313

Use one gene for samples correlation

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Hi, I'm using immunarch on a set of 3 cell types (2 biological replicates for each one). I was wondering if there is the possibility to perform all the steps...

rcarrr

My sample file names are very long and make ugly plot axes. can I plot using a different metadata column for names (eg sample_id or paste0(group, "-", replicate) from the...

splaisan

Gene usage plot

3

Hi there, I am working on 10X scTCR data lately. Here I got a problem, after I loaded my 10X data into immunarch, it would store paired info (alpha and...

crushseven-7

Hi, I realized that when I load my 10xGenomics data to be read as "single" chain data, the calculated proportions are not what I expected to. As an example, It...

ElviMagda

repLoad error

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## 🐛 Bug repLoad fails to load data ## To Reproduce Steps to reproduce the behavior: 1. run repLoad with path to csv files TRB

CUsdevoe

## 🐛 Bug ## To Reproduce Steps to reproduce the behavior: 1.read the BCR heavy chain data : igh igh the names of igh$data should be independent with clones. ##...

ddzhang3