rep-seq topic

List rep-seq repositories

immunarch

293
Stars
64
Forks
Watchers

🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

verified publisher icon immunomind

mixcr

312
Stars
78
Forks
Watchers

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

verified publisher icon milaboratory

vdjtools

125
Stars
40
Forks
Watchers

Post-analysis of immune repertoire sequencing data

verified publisher icon mikessh

compairr

24
Stars
5
Forks
Watchers

Comparison of Adaptive Immune Receptor Repertoires

verified publisher icon uio-bmi

covid19

42
Stars
3
Forks
Watchers

🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.

verified publisher icon immunomind

migec

41
Stars
19
Forks
Watchers

A RepSeq processing swiss-knife

verified publisher icon mikessh

migmap

50
Stars
20
Forks
Watchers

HTS-compatible wrapper for IgBlast V-(D)-J mapping tool

verified publisher icon mikessh

vdjmatch

36
Stars
7
Forks
Watchers

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

verified publisher icon antigenomics

vdjviz

27
Stars
10
Forks
Watchers

⚙️ A lightweight immune repertoire browser

verified publisher icon antigenomics