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Reconstruction of complex single-cell trajectories using CellRouter
**Hello, I seem to be getting the same error as "processtrajectories error #9" however I am following the Paul example using that data and copy pasting the the exact script...
Hi, I'm having an issue when I try to run the findPaths function. I'm following the tutorial with my own data, and up to that point everything works fine. When...
Hi, I've been trying to run your example code but I get the following error when I get to running "buildGRN": `Error in graph.data.frame(tmpAns, directed = directed, v = verticies)...
Hi,l am Yudonglin from PUMC in china, your work is very good and I like it! Reconstruction of complex single-cell trajectories using CellRouter | Nature Communications https://www.nature.com/articles/s4 1467-018-03214-y#MOESM17 My problem...
Hi, I met an error when I run processTrajectories. The error is following: Error in file(file, "rt") : cannot open the connection In addition: Warning message: In file(file, "rt") :...
Hi I am using Paul data as a toy but I am getting error :( ``` > plotReducedDimension(cellrouter, reduction.type = 'tsne', annotation="population", annotation.color = 'colors',showlabels = TRUE, width = 4.5,...
Is there a way to overlay a TSNE with the cellrouter trajectory calculated for those cells?
Hi, I'm following the tutorials and issues in github to make trajectory using Seurat object. I got this error from processTrajectories. > filename write.table(cellrouter@graph$edges, file=filename, sep='\t', row.names=FALSE, col.names = FALSE,...
Dear Developer, I would like to ask if there is a a way of plotting multiple annotations (Cluster info, cell type, other ) from the metadata to the top of...
HI, I'm trying to find paths for my custom_clusters, that are added to the cellrouter@sampTab: > cellrouter Error in order(tmp2$value, decreasing = TRUE) : > argument 1 is not a...
