cellrouter icon indicating copy to clipboard operation
cellrouter copied to clipboard

Overlay TSNE with Cellrouter trajectory

Open hgb1111 opened this issue 5 years ago • 4 comments

Is there a way to overlay a TSNE with the cellrouter trajectory calculated for those cells?

hgb1111 avatar Mar 04 '19 21:03 hgb1111

Sorry for my delayed response. I am working on an implementation for this. will send you ASAP.

Thanks!

Em seg, 4 de mar de 2019 às 16:58, hgb1111 [email protected] escreveu:

Is there a way to overlay a TSNE with the cellrouter trajectory calculated for those cells?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/edroaldo/cellrouter/issues/21, or mute the thread https://github.com/notifications/unsubscribe-auth/AJqUR3PU5v2HjZLjp5z-iyux2UzCz6Bnks5vTZcCgaJpZM4bdSsI .

-- Edroaldo

edroaldo avatar Mar 08 '19 13:03 edroaldo

I am also wondering if you have worked out a way to visualize the trajectory. Thanks!!

macros29 avatar Jun 13 '19 18:06 macros29

Hi! Wondering if there is a way to visualize the trajectory on a TSNE yet. Thanks!

hgb1111 avatar Aug 05 '19 16:08 hgb1111

My apologies but not yet. I should be able to start focusing on this the end of this month.

Thanks!

On Mon, Aug 5, 2019 at 12:29 PM hgb1111 [email protected] wrote:

Hi! Wondering if there is a way to visualize the trajectory on a TSNE yet. Thanks!

— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/edroaldo/cellrouter/issues/21?email_source=notifications&email_token=ACNJIR4P6DPX7W6N2RB3WYTQDBIP5A5CNFSM4G3VFMEKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOD3SLJGA#issuecomment-518304920, or mute the thread https://github.com/notifications/unsubscribe-auth/ACNJIR4PG4GPGXD6WNGQ4CDQDBIP5ANCNFSM4G3VFMEA .

-- Edroaldo

edroaldo avatar Aug 05 '19 20:08 edroaldo