could not find function "graph.data.frame" when running buildGRN on example code

[AndreaRP]

Hi,

I've been trying to run your example code but I get the following error when I get to running "buildGRN": Error in graph.data.frame(tmpAns, directed = directed, v = verticies) : could not find function "graph.data.frame" I had no trouble installing any dependencies either, so I don't understand where the problem could be, any insight would be appreciated. Session info: R version 4.0.3 (2020-10-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.6 LTS, RStudio 1.3.959

[edroaldo]

Hi Andrea,

Can you please try loading igraph before calling buildGRN: library(igraph)

Thanks!

On Tue, 22 Feb 2022 at 06:46, Andrea @.***> wrote:

Hi,

I've been trying to run your example code but I get the following error when I get to running "buildGRN": Error in graph.data.frame(tmpAns, directed = directed, v = verticies) : could not find function "graph.data.frame" I had no trouble installing any dependencies either, so I don't understand where the problem could be, any insight would be appreciated. Session info: R version 4.0.3 (2020-10-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.6 LTS, RStudio 1.3.959

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[AndreaRP]

That solved the issue, thanks a lot!

[edroaldo]

Great! Thanks for using CellRouter!

On Tue, 22 Feb 2022 at 11:20, Andrea @.***> wrote:

That solved the issue, thanks a lot!

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