cellrouter
cellrouter copied to clipboard
edroaldo
Reconstruction of complex single-cell trajectories using CellRouter
Hi, I work through most part of the analysis pipeline but the results of GRN scores obtained via grnscores() in specified paths SP_10.SP_8 as tSNE and barplot shows.the grn scores...
Hi, Thanks again for the great work. :) I'm testing cellrouter with our own data (Two conditions at day 3). There are ~20 cell sub-populations identified. K = 12 which...
Hi, When running the regulatornetwork function,`Error: ggplot2 doesn't know how to deal with data of class igraph` was reported.Here are the cmds I use: `> regulators=c("GATA1","GATA2")` `> regulatornetwork(x, regulators, 5,...
Hi,edroaldo, Thanks sincerely your previous helpful solutions again.Here I ask for your help again but it's in the part of running davidclustering function. :) the error reported like this: >...
Hi, Thanks for the great cellrouter. :) I'm testing mouse bone marrow sc RNA-seq example code from this [https://github.com/edroaldo/cellrouter/blob/master/stemid/StemID_BM_CellRouter.md](url). Everything works fine on my laptop. There is an error when...
Matrix
Hello, In order to apply CellRouter to my own datasets in the future, I would like to try to complete (and master) your tutorial with the mouse bone marrow single-cell...
Hello, Congratulations for your recent work. I was trying to complete your tutorial describing how to apply CellRouter to the mouse bone marrow single-cell RNA-sequencing dataset (Thank you very much...
Hello, I ran findpaths funtion with imputed 10x matrix according to the example with no error before this step.But the 2 generated files in results\paths\SP_46.SP_* are nearly empty.CellRouter.sh file are...