cellrouter

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Seurat to cellrouter error

3

Hi, I am trying to use cell router for trajectory analysis with Seurat object. Here are the commands and the errors that I am getting. intestinal_organoids_corrected_metadata

ghoshal

plotPathHeatmap function "invalid 'row.names' length"

5

When I run: ``` genelist

hgb1111

PlotTrajectory without smoothening? Genes that should be relatively constant are not?

1

Hi, Question 1) Is there a way to plottrajectory without smoothening? I want to look at what the "raw" expression change trajectory looks like beneath the smoothed graph. For example,...

hgb1111

Sorry, This is not a problem with your nice software rather my own problem. I noticed by `plotDRExpression` function we can plot a list of genes very clean because you...

beginner984

cellrouter addInfo

15

Dear Edroaldo, Thanks for designing the cellrouter program. Recently, I'm try to do trajectory using it. My current data is from Seurat, but I met this error when I want...

kunUCSD

Using seurat for cellrouter trajectory analysis

102

Hi, I have already my cell clustered by seurat, now I want to use cell router for trajectory analysis? how that would be please? saying cellrouter@sampTab will help but I...

fereshtehizadi

Whether can I use specific genes instead of PCto construct

9

zorrodong

Function findsubpopulations

13

Hello, Thank you for your previous answer. While I am able to find the subpopulations with the data set you use, I am unable to do the same with my...

LaptopY

processtrajectories error

23

Very nice work! However I am trying to work with your package and it goes smooth until the step of "processtrajectories" in which I am getting this error: cellrouter

natlasy

regulate module

3

Hi, sorry that i still have several questions to bother you.=.= 1.in the part of regulators network,labels of some genes are printed as picture below shows while other equal-sized ,equal-colored...

JianmeiZhong