Eric Deutsch

So it seems like the category manager may be the cause. When I run a NodeSynonymizer test for get_canonical_curies() I get: ``` ==== Get canonical curies for a set of...

So the problem is definitely that the CategoryManager is struggling and slow. One problem is that we internalize our (ARAX's) Biolink version as 3.0.3. And the RENCI Biolink lookup service...

Hi everyone, an update on this. Upon first testing the NodeSynonymizer slowness problems identified here: 1. NodeSynonymizer was taking 5 seconds to execute a fairly simple fetch. I determined that...

The reason is mostly that it is useful to know where the starting point of a query_graph and where the ending point is so that the display can properly know...

I got an alert at 1pm that there were again problems. This time on the main kg2 was not running: ``` * /mnt/data/orangeboard/kg2/RTX/code/UI/OpenAPI/python-flask-server/KG2/RTX_OpenAPI_kg2.start is not running ``` the log: ```...

Will be resolved with migration to PloverDB 2.0 KG2

Probably most urgently for responses. Then secondarily for showing a prebuilt QueryGraph And thirdly for actual build-a-graph. Although 2ndly and 3rdly may not really be separable.

I wonder if this is a case where we need some special logic in the KG2 build process to correct some known problems. And this is also a case where...

> I kinda like the idea of having it in add_qnode, so everything downstream will know as much info as possible (will help some KP's that require categories specified). A...

I think the history is that it wants to figure out what the essence nodes are and gives up with such a pattern. But I think we can easily remove...