Eric Deutsch

Retriever no longer hosts RTX-KG2, but rather now it hosts DINGO data, so the Retriever vs. Plover results comparison test is no longer possible. Closing.

I suppose one thing I wonder about is: where did the *treats* edge even come from? Presumably it came from xDTD? And xDTD's only evidence is an inf NGD relationship?...

ah, of course. At the risk of revealing more of my ignorance, may I ask a few more questions? So I had naively understood that the analysis support graph was...

I also share hesitancy to add 50k entries to PSI-MS, since I (and I suspect others) appreciate its reasonably compact nature. It occurs to me that it might be appropriate...

sure, this would be fine by me. We'd have to hope that our tangle of dependencies would be good on Python 3.12. Is 3.12 everyone else's vote as well? Any...

I never considered option 2 as a viable option, and assumed we were discussing option 1.

I am wondering if it might be easier/reasonable simply to write a trivial script to unpickle the file(s) and write to JSON under Python 3.9. And then another trivial script...

We do not want to downgrade reasoner-validator. We need the latest version in order to validate the latest TRAPI. I filed an issue with reasoner-validator: https://github.com/NCATSTranslator/reasoner-validator/issues/105

Version 5.0 of reasoner validator now formally supports Python 3.12: https://github.com/NCATSTranslator/reasoner-validator/releases I have updated requirements.txt in `master` to include version 5.0 and run a pip install from requirements.txt on arax.ncats.io...

Hi @bazarkua, sorry for the delay. Yes, this sounds fine. As far as I'm aware all endpoints on arax.ncats.io run on the custom compiled 3.9 and thus should not be...