Eric Deutsch

Breaking news from this morning's Architecture call, we will be expected to be compliant with Biolink 3.5.0 by July 7, heh..  https://docs.google.com/spreadsheets/d/1LEV3FyXBt3xm4bC5TQkVbrZalrr6OV2LnPtuLj1RVB4/edit#gid=1034097652

My opinion: based on the experience of the last few years, it is Translator custom to set somewhat unrealistic deadlines, which we (ARAX/KG2) meet about 50% of the time and...

FMA is a pretty important ontology I think. But it is mostly anatomy. A bit strange to have glucose. https://bioportal.bioontology.org/ontologies/FMA I'm thinking it should be supported by Biolink.

This is always a problem, but the issue is that there are potentially hundreds of attributes of metadata that we want to be able to capture. So we need a...

@RalfG any interest in giving this a try since most things are settled now?

yes indeed. I put in precursor mass accuracy and fragment mass accuracy as desirable attributes in the library. Mass tolerance strikes me more as a software parameter and a user...

Hi everyone, I have updated the document to reflect notes that I have been taking and the overall direction of the document, which is metadata at all levels, not just...

I agree that we should make sure that cross-linked peptides are supported. I think it is mostly already there with multiple simultaneous identifications already supported. But I suppose we need...

Switched document to all with link can suggest, as requested.

Newer document: https://docs.google.com/document/d/1o11m7grfHvMzfbTozvDY0twJ1g2dzk6I/edit But @RalfG is working on a system to encode this in JSON. See ongoing work in https://github.com/HUPO-PSI/mzSpecLib/pull/73 Next when we have @RalfG on the Friday call, we...