Eric Deutsch

Results 61 issues of Eric Deutsch

From Tyler's post in Architecture today: ![image](https://github.com/RTXteam/RTX-KG2/assets/12707718/0a736684-5bbc-4c0d-a150-8731b513048a)

high priority

Reading through the spec: https://www.w3.org/TR/2010/NOTE-curie-20101216/ I don't find an obvious mention whether whitespace is permitted in a CURIE, but whitespace separated list of CURIEs appears to be a thing: ![image](https://user-images.githubusercontent.com/12707718/111734372-3fce5e00-8837-11eb-9c82-abf8696c330b.png)...

The following ARAX result: https://arax.ncats.io/devED/api/arax/v1.4/response/dc05d73c-e55f-421c-b6d6-2aa417397537 is producing the following edge from KG2: ``` ... "object": "MESH:D004852", "predicate": "biolink:subclass_of", "qualifiers": null, "sources": [ { "resource_id": "infores:chebi; infores:genepio; infores:go-plus", "resource_role": "primary_knowledge_source", "source_record_urls":...

verify this fix in next kg2 build

I got a report from the ARS folks: we have noticed that ARAX is returning null scores for some of their results. can you look into it? https://arax.ncats.io/?r=44def7dd-809e-48bd-a411-fc9ae0d8e55c ![image](https://github.com/RTXteam/RTX/assets/12707718/d4299d7f-b7d9-4c93-bcac-75af39e4607f) Messages...

bug
high priority

Please add your substantial commits since master was deployed to TEST on the date in the title by EDITING this post with a terse Changelog entry. - Updated example Python...

Guthrie Price (UI Team) [1:26 PM](https://ncatstranslator.slack.com/archives/C03LX327RK8/p1710880011462479) [@Eric Deutsch (Expander Agent)](https://ncatstranslator.slack.com/team/UTHT6PYG5) just FYI it seems like the arax UI won’t work when the ARS is down in some environment even when...

I was assigned this issue by TAQA: https://github.com/NCATSTranslator/Feedback/issues/707 Apparently xDTD was trained with KG2-SemMedDB that asserts that Epoprostenol is used to treat rats. And there are lots of papers describing...

verify in next deployment

Starting a new issue since the old issues are pretty stale now. Observed this morning during high load: ![image](https://github.com/RTXteam/RTX/assets/12707718/03b33eb3-286f-454a-bdd5-f401bc23e97c) Both ARAX and KG2 requests are *occasionally* not terminating. https://arax.ci.transltr.io/ [System...

Although tests seem to pass locally, it seems that commits cause a test failure on the automatic testing instance: https://github.com/RTXteam/RTX/actions/runs/7225709946/job/19689713862

It seems like 95% of our deployment problems to ITRB are the "databases", i.e. massive files that need to be copied to our servers every time we deploy something and...

low priority