David Gault

Added a further commit to address failures in the nightly tests: https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/19008/console These last 2 failures related to spectral images using modulo C. I have updated the indexing for the...

I am still seeing failures for the modulo C files in the nightly tests, though from testing it looks as though the original implementation currently in the reader may also...

With regards the version, are you running the command from the bftools folder? Using the link you had in https://docs.openmicroscopy.org/bio-formats/5.8.2/users/comlinetools/index.html I get the below: `./bfconvert -version Version: 5.8.2 Build date:...

Hi @mbahin, it might be possible to simply use the range argument (https://bio-formats.readthedocs.io/en/latest/users/comlinetools/conversion.html#cmdoption-bfconvert-range). Though it is not specific to any one dimension so it may not be suitable if you...

Thanks for the report @ngladitz, I can confirm that the display handler is not properly interpreting the Sub Channels, the text imprinted in the image is the correct value. Also...

Hi @kevinjohncutler, apologies for the late reply, do you have a sample file you would be able to upload to https://www.openmicroscopy.org/qa2/qa/upload/

Some test failures that look to be due to this being excluded: https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/lastFailedBuild/consoleFull Excluding the config PR temporarily until this is back in the merge build will likely be enough...

With the first commit, removing the empty colour resulted in the remaining colours being re-indexed. With the latest commit the null colour is now handled so the previous colour indexes...

Thanks @WalkerKnapp for opening the initial draft. If are able to provide some sample files demonstrating the issue that would greatly help the testing. If you need a suitable upload...

Thanks @WalkerKnapp, I can confirm that we have received your CLA. There was only a single failure from the [nightly tests](https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/lastFailedBuild/console), and I suspect that may actually be a fix...