David Gault
David Gault
Issue was raised on forum thread https://forum.image.sc/t/can-not-read-nd2-image-stack-when-image-dimension-is-small/68155 but no sample file reproducing the issue is available as of yet. The issue reports that when opening an image stack (in this...
This is a follow up to the previous SVS fix: https://github.com/ome/bioformats/pull/3759 It was reported on thread https://forum.image.sc/t/problem-about-opening-some-svs-slides-in-qupath-v0-3-1-bio-formats-6-8-0/61404/27 and Issue https://github.com/ome/bioformats/issues/3757 The one sample file from the thread that was still...
Issue has been reported by multiple users on forum thread https://forum.image.sc/t/vsi-format-update-unable-to-open-new-files/70366/5 This appears to be recently occurring after performing a software update for VS200 scanner to software version 3.4.1 I...
Issue was raised on forum thread https://forum.image.sc/t/issues-with-ndpi-wsi-conversion-to-ome-tiff-concerning-kheops-qupath-ome-types/69862/8 and could be reproduced with the provided sample file and bftools 6.10.0 The sample file provided in thread is using PhotometricInterpretation of YCbCr,...
This issue was raised on forum thread https://forum.image.sc/t/error-converting-large-images-to-ome-tiff-using-the-command-line-bioformats-tool-bfconvert/70243 In this scenario the conversion is using 1024 x 1024 tiles and attempting to generate 6 resolution levels. At the lowest level...
Issue was raised on imagesc thread: https://forum.image.sc/t/different-custom-metadata-parsing-bioformat-using-fiji-knime-command-line/51704 A sample file has been provided but can also be easily reproduced by changing IDs in existing sample files. Tested with version 6.6.1....
Issue was raised on forum thread https://forum.image.sc/t/hamamatsu-ndpi-files-will-not-open-with-bio-formats/69266/3 A sample file has been provided which reproduces the error using Bio-Formats 6.10.0 The full stack trace is: ``` Exception in thread "BioFormats-ThumbLoader"...
Issue was raised on forum thread https://forum.image.sc/t/some-channel-names-not-importing-from-czi-files/69243/2 A sample image has been provided which reproduces the issue using Bio-Formats 6.10.0 In the sample image there are 7 rgb channels which...
Issue was raised on the forum thread https://forum.image.sc/t/problem-about-opening-some-svs-slides-in-qupath-v0-3-1-bio-formats-6-8-0/61404/15 A sample file was provided on the thread which reproduces the problem. The problem seems to be as a result of changes...
Issue was raised on forum thread https://forum.image.sc/t/could-bio-formats-interpretation-of-lif-files-containing-tiles-and-stitched-images-be-improved/64216 Bio-Formats currently opens every tile as a seperate series, so using an example from the thread, a file containing 3 stitched images of...