David Gault

I had started investigating the initial test failures last week but have not yet got them all resolved. Once I have more progress I will likely push some small fixes...

Last 2 commits have reduced the number of test failures (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/lastFailedBuild/console) Some of the remaining failures seem to be related to PALM data. Temporarily excluding for now, I will try...

Hi @NicoKiaru and @ekatrukha, I understand the frustration at the slow progress. The CZI is one of the most complex readers we have and replacing it completely was always going...

Resolved the conflicts so we should have the PR included back in the CI from tomorrow

Yeah, that is the correct build. It looks like the NPE for units is actually related to the second file` /data/qa-7271/bioformats_multifile.czi`. That particular exception is caught at [this line](https://github.com/ome/bioformats/blob/86658ee863614b83f42887efed86ffb68e8734fe/components/formats-gpl/src/loci/formats/in/ZeissCZIReader.java#L3335) and...

I haven't managed to get the 2 failing samples completely working yet, both are multifile datasets. I have pushed a few quick commits that should at least avoid the exceptions...

Made some progress though still seeing a failure for one dateset due to open file handles (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/lastFailedBuild/console). I haven't been able to reproduce this with the single dataset in isolation...

Yeah the order is a bit random and can be tricky to parse through. I will put together a full list of the failures and associated files over the next...

A further report of this issue has been made on forum thread https://forum.image.sc/t/error-generating-zstak-deep-zoom-images-ndpi-files-over-5gb/80800/6 In this recent report it was consistent across multiple files, all over 5GB, but smaller diles and...

Another report of this issue is seen on forum thread https://forum.image.sc/t/error-generating-zstak-deep-zoom-images-ndpi-files-over-5gb/80800/9 Two new sample files showing this issue are available at https://zenodo.org/record/7998534 With these sample files I was able to...