David Gault
David Gault
Thanks, that makes sense now.
Sample files are now located under `inbox/imagesc-73215`
The ZarrReader PR https://github.com/ome/ZarrReader/pull/53/ has been updated to try and improve the reordering behaviour to hopefully solve the issue seen in https://github.com/IDR/idr-metadata/issues/641#issuecomment-1554721800
The exception here looks as though the reader has failed to create any series metadata at all. The reader logic for that part of the code is as below: -...
So far I have been able to reproduce the same error using showinf when reading the dataset from pilot-idrtesting. If I copy the dataset locally using the exact same file...
The issue seems to be coming from within jzarr, it is able to find the attributes for the top level group but can't find any additional .group or .array files....
I took a local copy I can transfer over if that helps
Thanks @rharkes for reporting the issue. Are there any sample Indica Tiff files that could be used for testing? If you have some suitable samples and need an upload location...
Thanks again @NicoKiaru for the hard work investigating and getting the PR opened. I have marked it for inclusion for the repository tests to check for any side effects in...
Added a commit to fix a NullPointerException in the nightly tests (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-test-folder/18844/console)