Charles Tapley Hoyt
Charles Tapley Hoyt
The the adjusted mean rank (AMR) complements the reported MRR and hits@k metrics - it has been demonstrated to provide more fair comparisons between datasets and varying testing set sizes....
The Biomappings (https://github.com/biopragmatics/biomappings) project exports its curated mappings into SSSOM, however the code hasn't been updated since before the SSSOM standard to have the "mapping justification" (see https://github.com/mapping-commons/sssom/pull/117) and therefore...
the code in the innermost loop should be a class method on `Mapping` _Originally posted by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/143#discussion_r712853946_
why is the df even allowed to be none? _Originally posted by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/143#discussion_r712854797_ This happens a lot through the codebase - stuff is set as none by default....
TODO indeed. please refactor the code from export_ptable and reuse it _Originally posted by @cthoyt in https://github.com/mapping-commons/sssom-py/pull/143#discussion_r712852570_
# Summary of changes This PR implements a web-dependent loader for prefix-namespace definitions from Prefix.cc by parsing its context document (https://prefix.cc/context.jsonld) # Demo The Gene Ontology is a biomedical ontology...
I'm under the impression that AstraZeneca isn't allocating resources to maintaining this repository or answering questions. Is this correct? I don't feel comfortable answering questions or maintaining this as long...
The following prefixes show up in various places in UBERON but they are not in the Bioregistry, based on the OQUAT analysis in https://biopragmatics.github.io/oquat/unknowns/source/uberon and https://biopragmatics.github.io/oquat/invalids/source/uberon: | prefix | count...
This is an "epic" issue, just as a placeholder to reference various efforts towards standardizing synonym type definitions across the OBO Foundry ## Background These are the two precursor discussions...
https://obofoundry.org/ontology/ma and https://obofoundry.org/ontology/emapa appear to show these ontologies have regular standing, but I have been unsuccessful at contacting @tfhayamizu either on their issue trackers or by several emails over the...