Charles Tapley Hoyt
Charles Tapley Hoyt
There are several problematic URIs for relationships defined in UBERON: ``` URI number of edges with this URI http://purl.obolibrary.org/obo/uberon/core#proximally_connected_to 27 http://purl.obolibrary.org/obo/uberon/core#extends_fibers_into 16 http://purl.obolibrary.org/obo/uberon/core#channel_for 16 http://purl.obolibrary.org/obo/uberon/core#distally_connected_to 13 http://purl.obolibrary.org/obo/uberon/core#channels_into 7 http://purl.obolibrary.org/obo/uberon/core#channels_from 6...
Closes #371 ## Motivation _is ligand of_ and _has ligand_ don't say enough about the way that a chemical acts on a receptor. For ChIRO and the Chemical Roles Graph...
Closes #572 There are some overly-generic rules that help generate URIs for various registries. For example, the OLS almost only contained OBO Foundry ontologies at the start of the Bioregistry,...
Closes #253 Not sure why I forgot about this
This could have some implications on automated import, so it has to be the case that the prefixes are always normalized correctly otherwise this will break the nightly build
When I was going to do some curation of EDAM terms, I noticed that the SCOP entry actually was pointing to two different websites (albeit with similar names) that have...
- http://purl.uniprot.org/keywords/493 points to https://www.uniprot.org/keywords/KW-0493, this means that the `KW-` really is the banana!
Github wants to burn our party down... need to come up with a different way to do GHA https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Prefix Commons is a relatively high quality external registry, but it has so much content that we're hesitant to bulk import it. Therefore, we've been thinking about binning its records...
Closes #160