Deconvolute non-standard prefixes

[cthoyt]

The following prefixes show up in various places in UBERON but they are not in the Bioregistry, based on the OQUAT analysis in https://biopragmatics.github.io/oquat/unknowns/source/uberon and https://biopragmatics.github.io/oquat/invalids/source/uberon:

prefix	count	example_node	example_val
OBOL	3401	http://purl.obolibrary.org/obo/UBERON_0000031	OBOL:automatic
GAID	814	http://purl.obolibrary.org/obo/UBERON_0000002	GAID:376
PHENOSCAPE	281	http://purl.obolibrary.org/obo/UBERON_4200008	PHENOSCAPE:wd
BM	246	http://purl.obolibrary.org/obo/UBERON_0000007	BM:Die-Hy-HY
FBC	121	http://purl.obolibrary.org/obo/UBERON_0000122	FBC:DOS
UBERONTEMP	105	http://purl.obolibrary.org/obo/UBERON_0016929	UBERONTEMP:0ea3066e-0c22-417b-8ac4-91c2aacba792
GOC	70	http://purl.obolibrary.org/obo/UBERON_0000017	GOC:GO
ABA	62	http://purl.obolibrary.org/obo/UBERON_0000955	ABA:Brain
UBERONREF	45	http://purl.obolibrary.org/obo/UBERON_0000075	UBERONREF:0000003
MURDOCH	38	http://purl.obolibrary.org/obo/UBERON_0011472	MURDOCH:2183
WikipediaVersioned	31	http://purl.obolibrary.org/obo/UBERON_8410000	WikipediaVersioned:Duodenojejunal_flexure&oldid=937307798
BSA	26	http://purl.obolibrary.org/obo/UBERON_0000020	BSA:0000121
FEED	20	http://purl.obolibrary.org/obo/UBERON_0001572	FEED:rd
Dorlands_Medical_Dictionary	16	http://purl.obolibrary.org/obo/UBERON_0000313	Dorlands_Medical_Dictionary:MerckSource
ANISEED	13	http://purl.obolibrary.org/obo/UBERON_0000160	ANISEED:1235303
OGES	13	http://purl.obolibrary.org/obo/UBERON_0000068	OGES:000022
NominaAnatomicaVeterinaria	12	http://purl.obolibrary.org/obo/UBERON_0001451	NominaAnatomicaVeterinaria:2005
LG	11	http://purl.obolibrary.org/obo/UBERON_0004889	LG:0012616
OldNeuroNames	9	http://purl.obolibrary.org/obo/UBERON_0002575	OldNeuroNames:-1761421113
BILS	9	http://purl.obolibrary.org/obo/UBERON_0000105	BILS:0000105
BilaDO	9	http://purl.obolibrary.org/obo/UBERON_0000066	BilaDO:0000004
BRAINSPAN	8	http://purl.obolibrary.org/obo/UBERON_0014736	BRAINSPAN:BRAINSPAN
NIFSTD_RETIRED	8	http://purl.obolibrary.org/obo/UBERON_0000966	NIFSTD_RETIRED:birnlex_1156
Geisha	7	http://purl.obolibrary.org/obo/UBERON_0003052	Geisha:syn
WikipediaCategory	7	http://purl.obolibrary.org/obo/UBERON_0000474	WikipediaCategory:Female_reproductive_system
XtroDO	7	http://purl.obolibrary.org/obo/UBERON_0000066	XtroDO:0000084
Bgee	5	http://purl.obolibrary.org/obo/UBERON_0018241	Bgee:AN
XB	5	http://purl.obolibrary.org/obo/UBERON_0003056	XB:curator
NeuroNamesCNID	5	http://purl.obolibrary.org/obo/UBERON_0015510	NeuroNamesCNID:177
BrainInfo	4	http://purl.obolibrary.org/obo/UBERON_8440010	BrainInfo:2102
NIF	4	http://purl.obolibrary.org/obo/UBERON_0009630	NIF:NIF
DHB	3	http://purl.obolibrary.org/obo/UBERON_0002739	DHB:MD
J	3	http://purl.obolibrary.org/obo/UBERON_0002233	J:77634
PhenoscapeRCN	3	http://purl.obolibrary.org/obo/UBERON_0012260	PhenoscapeRCN:Oct2012
CUMBO	2	http://purl.obolibrary.org/obo/UBERON_0001020	CUMBO:CUMBO
INCF	2	http://purl.obolibrary.org/obo/UBERON_0001880	INCF:Seattle_mtg_2010
MorphoBank	2	http://purl.obolibrary.org/obo/UBERON_0013614	MorphoBank:177
NominaAnatomica	2	http://purl.obolibrary.org/obo/UBERON_0010356	NominaAnatomica:NA
Obol	2	http://purl.obolibrary.org/obo/UBERON_0003281	Obol:obol
PAPUB	2	http://purl.obolibrary.org/obo/UBERON_2001162	PAPUB:0000142
Phenoscape	2	http://purl.obolibrary.org/obo/UBERON_4000164	Phenoscape:PM
Swanson	2	http://purl.obolibrary.org/obo/UBERON_0001893	Swanson:2004
NIF_Organism	2	http://purl.obolibrary.org/obo/UBERON_0007221	NIF_Organism:birnlex_695
NOID	2	http://purl.obolibrary.org/obo/UBERON_0018367	NOID:1
OGEM	2	http://purl.obolibrary.org/obo/UBERON_0000307	OGEM:000006
BioMart	1	http://purl.obolibrary.org/obo/UBERON_0000363	BioMart:BioMart
CHECKME	1	http://purl.obolibrary.org/obo/UBERON_0003997	CHECKME:CHECKME
Giesha	1	http://purl.obolibrary.org/obo/UBERON_0005421	Giesha:syn
Hymans	1	http://purl.obolibrary.org/obo/UBERON_0010260	Hymans:Hymans
MTB	1	http://purl.obolibrary.org/obo/UBERON_0002145	MTB:379
AOO	1	http://purl.obolibrary.org/obo/UBERON_3000406	AOO:LAP
ASD	1	http://purl.obolibrary.org/obo/UBERON_3010449	ASD:BJB
Fast_Health_Medical_Dictionary	1	http://purl.obolibrary.org/obo/UBERON_0008230	Fast_Health_Medical_Dictionary:http://www.fasthealth.com/dictionary/
NCBI	1	http://purl.obolibrary.org/obo/UBERON_0001471	NCBI:matt
OMD	1	http://purl.obolibrary.org/obo/UBERON_0003075	OMD:neural+plate
PATOC	1	http://purl.obolibrary.org/obo/UBERON_0005160	PATOC:MAH
PLB	1	http://purl.obolibrary.org/obo/UBERON_0013730	PLB:plb
Renal_Physiology	1	http://purl.obolibrary.org/obo/UBERON_0008404	Renal_Physiology:Section_7
WA	1	http://purl.obolibrary.org/obo/UBERON_0003049	WA:dh
Wiktionary	1	http://purl.obolibrary.org/obo/UBERON_7500117	Wiktionary:opisthocranion
bgee	1	http://purl.obolibrary.org/obo/UBERON_0036219	bgee:ANN
ref	1	http://purl.obolibrary.org/obo/UBERON_0004870	ref:Stedmans
DrerDO	1	http://purl.obolibrary.org/obo/UBERON_0004707	DrerDO:0000052
MAP	1	http://purl.obolibrary.org/obo/UBERON_0001155	MAP:0000001
TA2	1	http://purl.obolibrary.org/obo/UBERON_8410000	TA2:2952
Talairach	1	http://purl.obolibrary.org/obo/UBERON_0035933	Talairach:1047

Generated by the following code:

from tabulate import tabulate
from collections import Counter

import requests


def main():
    url = "https://raw.githubusercontent.com/biopragmatics/oquat/main/results/uberon.json"
    data = requests.get(url).json()

    counter = Counter()
    examples = {}
    for data in data["results"].values():
        for key in ["synonym_pack", "prov_pack", "xref_pack"]:
            for prefix, uri_to_value_dict in data[key]["unknown_prefixes"].items():
                counter[prefix] += len(uri_to_value_dict)
                examples[prefix] = list(uri_to_value_dict.items())[0]

    rows = [(prefix, count, *examples[prefix]) for prefix, count in counter.most_common()]

    print(
        tabulate(
            rows, headers=["prefix", "count", "example_node", "example_val"], tablefmt="github"
        )
    )


if __name__ == "__main__":
    main()

Any help figuring out what these are and how they're used would be appreciated!