Charles Tapley Hoyt
Charles Tapley Hoyt
This is an epic issue about how to model metaclasses in ontologies ## Charlie's original question I [asked a question](https://obo-communitygroup.slack.com/archives/C01BDKWDS91/p1695723651721169) on the OBO Foundry slack, but I think it would...
BFO fails on two super simple points: 1 ERROR [missing_ontology_description](http://robot.obolibrary.org/report_queries/missing_ontology_description) http://purl.obolibrary.org/obo/bfo.owl [dc:description](http://purl.org/dc/terms/description) 2 ERROR [missing_ontology_title](http://robot.obolibrary.org/report_queries/missing_ontology_title) http://purl.obolibrary.org/obo/bfo.owl [dc:title](http://purl.org/dc/terms/title) I would directly add these, but I am not sure how to contribute
Right now, there's a lot of "id" keys in the OBO Graph format, which means you have to write omni-parsers that guess whether something is a CURIE or a URI....
`BaseResolver.subresolver()` allows for the resolver to be subsetted based on a list of keys. This might be useful for HPO scenarios.
The documentation page for [Gene](https://biolink.github.io/biolink-model/docs/Gene) (and other documentation pages) refer to prefixes and CURIEs without referencing what registry/prefix map these come from, allowing for ambiguity about what each one means....
Currently, the `curie_map` element takes a dictionary with string keys and string values. I propose we extend the data model of what can go in here: 1. If a string...
Despite the advantages of using LinkML to define the SSSOM datamodel and autogenerate this page https://mapping-commons.github.io/sssom, I do not enjoy reading this page. As an developer who wants to produce...
When you got to the SSSOM website (https://mapping-commons.github.io/sssom), it gets right into the technical description. The first page should provide the high-level background and motivation for its existence. This text...
In this PR, I demonstrate the following: 1. Declaring an individual corresponding to my current top-level affiliation, Harvard University (https://ror.org/03vek6s52) via its Research Organization Registry (ROR) persistent identifier 2. Add...
This pull request continues the effort to standardize properties used in the ChEBI ontology into RO that was started in #662 and #696. This pull request adds two data properties...