Charles Tapley Hoyt
Charles Tapley Hoyt
Below is what the OLS configuration for a given ontology looks like. It would be valuable to be able to auto-generate one of these for a given Bioregistry record ```yaml...
As a follow-up to #569, it's the case that several ontologies in the OLS don't use OBO PURLs, which means the automated code for constructing OLS (and BioPortal) URIs is...
The ZINC web application lists a huge amount of vendors and catalogs for its chemicals. We could create many new prefixes based on these by following the instructions at https://github.com/biopragmatics/bioregistry/blob/main/docs/CONTRIBUTING.md#content-contribution...
E.g., both of the following should be generated, just in case banana is/isn't used - `https://www.ebi.ac.uk/intact/interaction/EBI-`
Related to https://github.com/OBOFoundry/OBOFoundry.github.io/issues/2149 ## What this Does Applies the annotation property [has ontology root term (IAO:0000700)](http://purl.obolibrary.org/obo/IAO_0000700) four times as the ontology level to list the four root terms: 1. SO:0000400...
If the `main.py` were included in the source code hierarchy, the python entrypoints in setuptools could be used ot make a vanity cli called `omop2obo` along with installation of the...
Closes #56 This PR does the following: 1. Moves `main.py` into the main package hierarchy. My personal preference is to name the file `cli.py`, but I'll leave this as an...
As a follow-up to this twitter discussion Really cool post, but I wish it were possible to directly re-run it (there are local file paths to ChEMBL data and no...
The [`chembl_downloader`](https://github.com/cthoyt/chembl-downloader) automates downloading the ChEMBL SDF dump, and there's a little code that wraps gunzipping it and creating a ForwardSDMolSupplier in a context generator. This will hopefully make it...