Chris Wright

`iden` measures the proportion of aligned (non-indel) bases which are "identical" to their reference base; it is the substitution rate. `err_ont` and `err_bal` both measure total error (substitutions, insertions, and...

`coverage` measures the proportion of the assembly contig that is covered by the alignment, whereas `ref_coverage` measures the same for the reference sequence.

Hi @BrianaGross, In a word, yes. We do not test pomoxis with python > 3.6 so cannot guarantee it will work correctly with python 3.7.

For the conda installation method I am unsure. If installing from source you would have to edit this [line](https://github.com/nanoporetech/pomoxis/blob/master/setup.py#L81), of the setup.py file before running `make install`.

Hi @beasty1711 Can you provide the full command you are running (mini_assemble has several modes of operation), and the full log of its output?

A lot of information is written to stderr and stdout of the programs which mini_assemble runs. Admittedly its a little daunting to trace back through that for the uninitiated. If...

We are currently updating the documentation, and will add an FAQ section. We have seen this error when the third party racon program is given a sequence file in the...

Hi @JesseBNL, Thank you for your interest in pomoxis. From the screenshot above, the most I can surmise is that for some reason the racon source code hasn't been fetched...

Hi @kautto, We would not recommend running `mini_assemble` on a human genome, this is not really a use case considered in its design. You would be better served by using...

The screenshot indicates that `cmake` is not installed on your system. This is required to compile the third-party `racon` code. You should install this using your system package manager. We...