Chris Wright

After studying things more, I'm relatively well satisfied that in a sense this is the intended behaviour of the code and not a bug per-se. (I will change the title...

For what its worth I'm using: ``` gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0 ``` so nothing blazingly new, but not terribly crusty either. Maybe I'll spend my evening going into the weeds...

Setting `--cap-kalloc 100m --cap-sw-mem 50m` (no particular reason for those choices, other than being smaller than the defaults) does provide more controlled memory usage as intended. The performance isn't noticeably...

Medaka caches models that it downloads in your home directory. So if your HPC nodes mount at HOME directory the same as a computer where you do have internet access,...

Could you please show the error you get while running the above command.

Are you entirely sure that `/model/r941_min_sup_g507_model.tar.gz` is the path where you have saved the model file, that it is readable by your user, and is not a broken symbolic link?...

This seems like the model is not being upacked correctly at runtime, or is not a valid model tar.gz. Can you trying untarring the model file you have outside of...

That seems correct. I asked because: ``` tensorflow.python.framework.errors_impl.NotFoundError: Unsuccessful TensorSliceReader constructor: Failed to find any matching files for /tmp/tmpqde07q4d/model/variables/variables ``` suggests something was currupt about the tar.gz. At this point...

> My question is, if I run medaka in the login node, cancel the job and then re-send it again on a computing node, is the model stored somewhere so...

As stated in the README: > The bioconda medaka packages are no longer supported by Oxford Nanopore Technologies. The recommended method of installation is through the packages on PyPI which...