Chris Wright
Chris Wright
Is there a particular reason you wish to compile medaka from source? The recommended installation method is through the binary wheels available on PyPI. It seems you have managed to...
Medaka is tripping up over the fact that you're input scaffold sequences have names that look a bit like intermediate names it creates for itself for chunks of data ```...
This is fairly common for virtual machines not to support long vector instructions. On Windows you might like to try Windows Subsystem for Linux to run a Ubuntu environment. It...
The last time we revised which binary packages we build and push to PyPI, many of medaka's dependencies did not have Python 3.12 packages available. We will look at adding...
Hi @tfwulff, Would it be possible for you to share you inputs in order to investigate further? This is not something we've ever observed.
The simple question first: contigs are never merged during polishing. It is unlikely that we will ever implement GFA output. I'd have to refresh my memory of the details of...
Hmmm, even in the case of simple links care would need to be taken in implementing this because medaka can arbitrarily extend contigs ends (not starts). This could have subtle...
We have macOS ARM binaries here: https://anaconda.org/nanoporetech/parasail-python/files bioconda does not make any aarch64 binaries.
@DoaneAS, The error `autoreconf -fi exited with return code 1` likely stems from not having all the build tools required when you ran the pip install. I received this error...