Chris Wright

I agree in principle that this is a nice option I have. Currently this package does not exist on pypi (and I doubt we will have the time to put...

IIRC there is no option to `setuptools.setup` to place items into dist/bin (listing binaries under scripts is a no go). One workaround is to do what is done here: https://github.com/nanoporetech/pomoxis/blob/master/setup.py,...

`MANIFEST.in` controls files that get placed into the sdist of a python package, it will not (I believe) say anything about installation of built packages (what `setup.py install` achieves). The...

@Permafacture as per the OPs original specification, the issue at hand is installing the files to a location on the `$PATH`, do you know of a cleaner way to do...

This package uses CFFI for creating the python extension whilst mappy uses cython. Creating and including libbwa.a here was simply the easiest thing to do (rather than listing all the...

@lh3 Thanks for your clarifying [blogpost](http://lh3.github.io/2018/04/02/minimap2-and-the-future-of-bwa).

We have no definitive recommendation on this topic. I can provide only suggestions. The flye assembler has options for "corrected reads" and for "trusted contigs". These definitions are most apt...

Hi @tbooth, The scripts in the current version in Guppy were taken from an earlier version of this repository, hence the similarities. Guppy needs updating, IIRC the major difference is...

We recommend not using duplex-tools 😄 . The functionality of the project is superceeded by the functionality built in to the dorado basecaller.

Hi @dpaudel-tb, The assumption that there is a trivial relationship between the simplex calls and the duplex calls is incorrect. The duplex caller is not formed trivially from the simplex...