Chris Wright

Hi @Noah603 Its not clear to me from the above what you have done to install pomoxis. Could you confirm how this was done? Katuali expects that it is installed...

As above, `katuali` expects `pomoxis` to be installed into a virtual environment (not a conda environment). If you are on Linux, possibly the easiest thing to do is: cd pomoxis...

@JannesSP, Historically we have used bioconda to distribute some of our software pacakges. However we are moving away from using bioconda as we cannot control the contents of such packages...

We do have already our own conda channel :wink: https://anaconda.org/nanoporetech

Hi @valentinavan, The error above all seems to stem from when the installation is attempting to install the python module `pysam`. If you forget about `katuali` for the moment and...

It looks like the `test` rull in the make file isn't quite correct. Your issue will be alleviated by running: make venv/bin/activate test

Hi @dieunelderilus, I noticed in your command above you have a `~` in front of `barcode01`, I suspect that this is not correct?

There are no current plans to update the models in this repository. This repository should now be considered deprecated and support for it will be minimal.

You are correct, sloika is obsolete, deprecated and no longer supported. If you wish to train basecaller models I would direct you to [bonito](https://github.com/nanoporetech/bonito).

Yes sloika and scrappie are contemporaneous. Reading the source code for scrappie should provide you with the information required to implement the same network architecture within bonito, or independently. I'm...