cellxgene

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We need to update the logo (and favicon?) to reflect branding changes. https://drive.google.com/drive/folders/1J-Dqc_SWLpkA9gQxYOeKiYzuTikfNXrr

seve

[QUESTION] How to change the initialContent of Suggest @blueprintjs/select to list full genes for Quick gene search.

11

Hi all, I want to change the initalContent of Suggest to show full genes when clicking on the quick search box. Right now, it pops out a "Enter a gene"...

lijinbio

docs: updating readme and display version for rebranding

1

#309 #### Reviewers **Functional:** @seve **Readability:** @seve @karenliang0 --- ## Changes - add - remove - modify Updating Readme and __init__.py

ashin-czi

[BUG] Spatial coordinates not detected as layout/embedding for AnnData

3

**Describe the bug** When loading a spatial AnnData file, only embeddings like "pca", "umap" are offered but not "spatial". According to the [documentation](https://github.com/chanzuckerberg/cellxgene-documentation/blob/03fff9c989e94755e1a7f9709b1f821af7828633/explore-data/explorer-tutorials.md#cellxgene-explorer-interface), it should be possible to display spatial...

aeisenbarth

feature request: split screen option

6

Hi! I'm working a lot with cellxgene and one thing that would be really useful for me is a split-screen option, allowing for two UMAPS colored in two different ways....

LisaSikkema

[QUESTION] How to include multimodal data

1

Hello, I am a big fan of this tool and am trying to incorporate it into our datasets. We currently use Seurat, and I have been successful in exporting my...

curtisd0886

Compatibility tests are failing on python 3.6

1

I believe our version of actions/setup-python is out of date. Version 2 allows for the downloading of python version from actions/python-versions.

seve

Release version 1.1.0 [DO NOT MERGE]

1

#### Reviewers **Functional:** **Readability:** --- ## Changes - add - remove - modify

atolopko-czi

Looks like the last time these succeeded in GHA was https://github.com/chanzuckerberg/cellxgene/actions/runs/2199206177. Once fixed, reinstate the Github branch protection rule that enforces that smoke-test-annotations must be pass (this has been removed...

atolopko-czi

The cli `annotate` command should support reuse of the reference embedding when the user wants to perform prediction using multiple classifier levels. The reference embedding is stored in `obs` and...

atolopko-czi