cellxgene
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chanzuckerberg
An interactive explorer for single-cell transcriptomics data
**The performance issue** On the Azimuth dataset, which has approximately 1 million cells and 77,000 genes, The front-end can only keep ~3-4 gene sets loaded before it will re-fetch them...
Sorry in advance if there's already an issue for this. When going back to the full embedding after reembedding a subset, the selected cells get messed up. 1) Select cells...
Please allow export of differential expression results - the list of genes together with statistics (p-value, average and stdev in each group). CC: @alokito
- [ ] autosuggest in create geneset - [ ] autosuggest in add gene to geneset 
Put together by @liaprins-czi @sidneymbell @colinmegill Problem: cell render overlap prevents user from quickly gauging cell count and comparison ## Sources of problems 1. Cells are rendered too large 2....
### Problems: * Strange to have diffexp / computation in left sidebar with metadata * Users cannot return to a selection once they've made it and changed it * Differential...
**Is your feature request related to a problem? Please describe.** I would like to plot on a scatter plot (plotX/plotY) calculated (non-categoric) features with other features **Describe the solution you'd...
We are using CellXGene as part of a larger project, where people type a gene and get data from a variety of resources - and one is CellXGene via a...
https://github.com/chanzuckerberg/cellxgene/blob/a233cb14cb6836bc0c494324ea3764bfeba9f578/client/__tests__/util/stateManager/controlsHelpers.test.js#L6-L6
Is there a way to get the highest expressed genes of a population of cells? Using the differently expressed genes feature to identify an unknown cell populations sometimes can't be...
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An interactive explorer for single-cell transcriptomics data