cellxgene

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**Is your feature request related to a problem? Please describe.** Currently cellxgene supports only h5ad, and if one wants to run it using serverless ifrastructure it is not possible (as...

rgranit

Single-cell data is sparse (i.e. there are many zeros), and the difference between not-expressed (zero) and expressed (1, 2, 3, ...) can be highly informative. Currently cellxgene plots data using...

slinnarsson

[QUESTION] Upload multiple datasets (.h5ad)

2

Hi everyone, I am about to setup a cellxgene server for our published single cell datasets. Deployment of cellxgene via docker worked perfectly fine for me. Though I couldn't find...

vschnei

[BUG]

3

**Describe the bug** Some of the documentation for CZ CELLxGENE Explorer does not match the latest version of the interface. **To Reproduce** Steps to reproduce the behavior: 1. Go to...

EMRutherford

exporting data

3

It would be incredibly useful to be able to export the figures as pngs or vectorial figures. I've shared our dataset with collaborators and they are either taking screenshots or...

aopisco

one-click screengrab

1

can we facilitate the "screenshot" for copying and pasting into slack, email, powerpoint? e.g. a button to "share" (or "copy" or "screenshot" etc) that copies a PNG to the user's...

neuromusic

Figure mode

3

We might allow users to customize figures, layering on extra information, when they want to screenshot and/or formally export. This functionality could be centralized in a menu. Issues that might...

colinmegill

Please cite our preprint if you use CZ CELLxGENE in your work. Citation: **cellxgene: a performant, scalable exploration platform for high dimensional sparse matrices** Colin Megill, Bruce Martin, Charlotte Weaver,...

0seastar0

Sometimes the longer gene labels get cut off, in the right hand side panel. It would be nice to be able to increase the width of both the side panels,...

crichgriffin

[BUG] Missing "CELLxGENE Annotate Logo" image in launched instance

3

Hello, we have found a small bug when updating to the newest version of cellxgene (v1.1.1). There is an image that seems to not be generating on the top left...

Dane-Z